PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2220_iso_9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 480aa    MW: 53777.7 Da    PI: 7.566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2220_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-10384431448
                                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                          WT  E ++l+d+v q+G g+W+ I + +     +Rt+ ++k++w+++l
  cra_locus_2220_iso_9_len_1865_ver_3 384 WTVSEVKKLIDGVSQYGVGRWSHIKKDLFsssAHRTAVDLKDKWRNLL 431
                                          **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.901376435IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-13378436IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15378441IPR009057Homeodomain-like
SMARTSM007171.4E-10380433IPR001005SANT/Myb domain
PfamPF002494.1E-8384431IPR001005SANT/Myb domain
CDDcd116602.04E-20384432No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
XEHLLGQEVR DIMPNENESG KLQAPNALLT CEDYLLDIES GESITKLDYH LGKGSQNLVL  60
ESHTEENKAG YNGPPQESQL SCPIDWMHDF PEDLDMNDYE SNGIFSCSPN SELSADRWFK  120
YPTSFPVESI EQLEDVSGMF PVKNEKNTTS SPGLKSEEMF CSSITEQQNV YESVGQHAEG  180
EPNIGQDVSR CPPQGSVICP PTGKRLRKPP HRFIDELLEP NSRQVRRKFS IPASKGKSSN  240
VKHHKHYCVK SKAERSFSGE PAAIAIQVPF GPLICEEREK KQVPVVTKVI HPKPIASMAI  300
SEGDCISSRK KQTPVAPKVL HSKPIASVAK SEEDFVSSQQ MQLCIVPKVL DSEPVASVAT  360
SGEDSLSIMK TVEEGGRRKH HILWTVSEVK KLIDGVSQYG VGRWSHIKKD LFSSSAHRTA  420
VDLKDKWRNL LKATCVQTEG KRGEDKKRNL AWRPLPKSVI RRVRELAVLY PYPRDFQTKH
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723